VirSorter¶
VirSorter applies a multi-classifier, expert-guided approach to detect diverse DNA and RNA virus genomes. The bundle packages version 2.2.4.
Usage example¶
The following command can be executed in the terminal to load the bundle:
The module makes the virsorter command available. The virsorter_shell
command can be used to access a shell in the bundle.
Run pet list -t virsorter for a list of examples.
The configuration file can be edited by running:
Performance notes¶
No performance notes available
Recommended resources per session¶
VirSorter should be run on a system with at least 16 GB of RAM and 2 threads.
Benchmarks¶
No benchmarks available.
Community guides and tutorials¶
- No community guides available.
Official site and documentation¶
Licensing information¶
VirSorter is licensed under the GPLv2 license.
Primary citation¶
Guo, J., Bolduc, B., Zayed, A.A. et al. VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses. Microbiome 9, 37 (2021). doi
External guides and resources¶
- If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za