FastTree¶

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. The fasttree bundle packages version 2.1.11.

UFS HPC Usage Example¶

The following command can be executed in the terminal to load the bundle:

1	`module load fasttree`

FastTree can be run as shown below:

1 2	`fasttree FastTree`

The fasttree_shell commmand can be used to access a shell in the fasttree bundle.

1	`fasttree_shell`

Performance Notes¶

No performance notes available

Recommended resources per session¶

No recommended resources available

Benchmarks¶

No benchmarks available.

UFS HPC Community Guides and Tutorials¶

No community guides available.

Official site and documentation¶

Licensing Information¶

FastTree is licensed under the GPLv2 license.

Primary citation¶

External Guides and Resources¶

If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za