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Medaka

Medaka creates consensus sequences and variant calls from Nanopore sequencing data. The bundle packages version 2.0.1.

Usage example

The following command can be executed in the terminal to load the bundle:

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module load medaka

Medaka can be run as shown below:

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medaka
medaka_consensus_joint
medaka_data_path
medaka_variant
medaka_consensus
medaka_counts
medaka_version_report

The medaka_shell command can be used to access a shell in the bundle.

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medaka_shell

Performance notes

No performance notes available

No recommended resources available

Benchmarks

No benchmarks available.

Community guides and tutorials

  • No community guides available.

Official site and documentation

Licensing information

Medaka is licensed under the Oxford Nanopore Technologies PLC. Public License Version 1.0.

Primary citation

External guides and resources

  • If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za