Liftoff¶
Liftoff maps annotations in GFF or GTF between assemblies of the same, or closely related species. The bundle packages version 1.6.3.
Usage example¶
The following command can be executed in the terminal to load the bundle:
The module makes the liftoff command available. The liftoff_shell command
can be used to access a shell in the bundle.
Run pet list -t liftoff for a list of examples.
Performance notes¶
No performance notes available
Recommended resources per session¶
Liftoff should be run on a system with at least 64 GB of RAM and 8 threads. Recommendations taken from Insufficient memory and Does minimap2 support multi-threading?
Benchmarks¶
No benchmarks available.
Community guides and tutorials¶
- No community guides available.
Official site and documentation¶
Licensing information¶
Liftoff is licensed under the GNU GPLv3 license.
Primary citation¶
Shumate, Alaina, and Steven L. Salzberg. 2020. “Liftoff: Accurate Mapping of Gene Annotations.” Bioinformatics December. doi
External guides and resources¶
- If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za