IQ-TREE¶
IQ-TREE can be used for phylogenomic inference. The bundle packages version 3.0.1.
Usage example¶
The following command can be executed in the terminal to load the bundle:
The module makes the iqtree and iqtree3 commands available. The
iqtree_shell command can be used to access a shell in the bundle.
Performance notes¶
No performance notes available
Recommended resources per session¶
IQ-TREE should be run on a system with at least 8 GB of RAM and 4 threads.
Benchmarks¶
No benchmarks available.
Community guides and tutorials¶
- No community guides available.
Official site and documentation¶
Licensing information¶
IQ-TREE is licensed under the GPLv2 license.
Primary citation¶
T.K.F. Wong, N. Ly-Trong, H. Ren, H. Banos, A.J. Roger, E. Susko, C. Bielow, N. De Maio, N. Goldman, M.W. Hahn, G. Huttley, R. Lanfear, B.Q. Minh (2025) IQ-TREE 3: Phylogenomic Inference Software using Complex Evolutionary Models. Submitted, doi.
External guides and resources¶
- If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za