Skip to content

RagTag

RagTag is a set of tools for fast and flexible genome assembly, scaffolding, and improvement. The bundle packages version 2.1.0.

Usage example

The following command can be executed in the terminal to load the bundle:

1
module load ragtag

The RagTag commands can be run as shown below:

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
ragtag_agp2fa.py
ragtag_break_query.py
ragtag_delta2paf.py
ragtag_patch.py
ragtag_scaffold.py
ragtag_stats.py
ragtag_agpcheck.py
ragtag_correct.py
ragtag_merge.py
ragtag.py
ragtag_update_gff.py
ragtag_asmstats.py
ragtag_create_links.py
ragtag_paf2delta.py
ragtag_rename.py
ragtag_splitasm.py

The ragtag_shell command can be used to access a shell in the bundle.

Performance notes

No performance notes available

No recommended resources available

Benchmarks

No benchmarks available.

Community guides and tutorials

  • No community guides available.

Official site and documentation

Licensing information

RagTag is licensed under the MIT license.

Primary citation

External guides and resources

  • If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za