RepeatModeler¶
RepeatModeler is a de novo transposable element (TE) family identification and modeling package. The bundle packages version 2.0.7
Usage example¶
The following command can be executed in the terminal to load the bundle:
The module makes the following commands available:
The repeatmodeler_shell command can be used to access a shell in the bundle.
Run pet list -t repeatmodeler for a list of examples.
Performance notes¶
No performance notes available
Recommended resources per session¶
RepeatModeler should be run on a system with at least 64 GB of RAM and 16 threads.
Benchmarks¶
No benchmarks available.
Community guides and tutorials¶
- No community guides available.
Official site and documentation¶
Licensing information¶
RepeatModeler is licensed under the Open Software v2.1 license.
Primary citation¶
RepeatModeler2 for automated genomic discovery of transposable element families Jullien M. Flynn, Robert Hubley, Clément Goubert, and Arian F. Smit April 16, 2020 doi
External guides and resources¶
- If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za