VCFtools¶

VCFtools provides easily accessible methods for working with complex genetic variation data in the form of VCF files. The vcftools bundle packages version 0.1.16.

UFS HPC Usage Example¶

The following command can be executed in the terminal to load the bundle:

1	`module load vcftools`

The VCFtools utilities can be run as shown as below:

1	`vcftools`

The vcftools_shell commmand can be used to access a shell in the vcftools bundle.

1	`vcftools_shell`

Performance Notes¶

No performance notes available

Recommended resources per session¶

No recommended resources available

Benchmarks¶

No benchmarks available.

UFS HPC Community Guides and Tutorials¶

No community guides available.

Official site and documentation¶

Licensing Information¶

VCFtools is licensed under the GPLv3 license.

Primary citation¶

External Guides and Resources¶

If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za