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FastQC

FastQC is a quality control tool for high throughput sequence data. The fastqc bundle packages version 0.12.1.

UFS HPC Usage Example

The following command can be executed in the terminal to load the bundle:

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module load fastqc
The fastqc command can then be run as shown below: 
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fastqc
The fastqc_shell command can be used for a shell in the fastqc bundle. 
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fastqc_shell

Performance Notes

No performance notes available

No recommended resources available

Benchmarks

No benchmarks available.

UFS HPC Community Guides and Tutorials

  • No community guides available.

Official site and documentation

Licensing Information

FastQC is licensed under the GPLv3 license.

Primary citation

External Guides and Resources

  • If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za