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AUGUSTUS

AUGUSTUS predicts genes in eukaryotic genomic sequences. The augustus bundle packages version 3.5.0.

UFS HPC Usage Example

The following command can be executed in the terminal to load the bundle:

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module load augustus
The AUGUSTUS utilities can be run as shown below: 
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augustus
augustify.py
augustus2browser.pl
augustus2gbrowse.pl
The augustus_shell commmand can be used to access a shell in the augustus bundle. 
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augustus_shell

Performance Notes

No performance notes available

No recommended resources available

Benchmarks

No benchmarks available.

UFS HPC Community Guides and Tutorials

  • No community guides available.

Official site and documentation

Licensing Information

AUGUSTUS is licensed under the Artistic license 1.0.

Primary citation

External Guides and Resources

  • If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za