Nextflow¶
Nextflow enables scalable and reproducible scientific workflows. The bundle packages version 25.04.4.
Usage example¶
The following command executed in the terminal is enough to load the bundle:
The module makes the nextflow command available. The nextflow_shell command
can be used to access a shell in the bundle.
Run pet list -t nextflow for a list of examples.
Performance notes¶
No performance notes available
Recommended resources¶
The recommended resources, for Nextflow, depends on the workflow being run. The default memory for the main Nextflow Java process is 2 GB of RAM, cf.. Provide at least 1 core for the main Nextflow Java process.
Benchmarks¶
No benchmarks available.
Community guides and tutorials¶
- No community guides available.
Official site and documentation¶
Licensing information¶
Nextflow is licensed under the Apache v2 license.
Primary citation¶
P. Di Tommaso, et al. Nextflow enables reproducible computational workflows. Nature Biotechnology 35, 316–319 (2017) doi
External guides and resources¶
- If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za