chopper¶
chopper is a Rust implementation of NanoFilt+NanoLyse, and is intended for long read sequencing such as PacBio or ONT, to filter and trim FASTQ files. chopper version 0.8.0 is packaged.
Usage example¶
The following command can be executed in the terminal to load the bundle:
chopper can be run as shown as below:
The chopper_shell command can be used to access a shell in the chopper bundle.
Performance notes¶
No performance notes available
Recommended resources per session¶
No recommended resources available
Benchmarks¶
No benchmarks available.
Community guides and tutorials¶
- No community guides available.
Official site and documentation¶
Licensing information¶
chopper is licensed under the MIT license.
Primary citation¶
External guides and resources¶
- If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za