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Bismark Bisulfite Mapper

Bismark is a set of tools for the analysis of Bisulfite-Seq (BS-Seq) data. The bundle packages Bismark version 0.24.2.

Usage example

The following command can be executed in the terminal to load the bundle:

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module load bismark

The Bismark utilities can then be run as shown below:

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bismark
bismark2report
bismark_genome_preparation
bismark2bedGraph
bismark2summary
bismark_methylation_extractor

The bismark_shell command can be used to access a shell in the bundle.

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bismark_shell

Performance notes

No performance notes available

No recommended resources available

Benchmarks

No benchmarks available.

Community guides and tutorials

  • No community guides available.

Official site and documentation

Licensing information

Bismark is licensed under the GNU GPLv3 license.

Primary citation

External guides and resources

  • If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za