MCScanX¶
MCScanX detects syntenic blocks and progressively aligns multiple syntenic blocks against reference genomes. The bundle packages version 1.0.0.
Usage example¶
The following command can be executed in the terminal to load the bundle:
The module makes the following commands available:
The mcscanx_shell command can be used to access a shell in the bundle.
Run pet list -t mcscanx for a list of examples.
Performance notes¶
No performance notes available
Recommended resources per session¶
MCScanX should be run on a system with at least 4 GB of RAM and 1 thread.
Benchmarks¶
No benchmarks available.
Community guides and tutorials¶
- No community guides available.
Official site and documentation¶
Licensing information¶
MCScanX is licensed under the BSD 2-Clause "Simplified" license.
Primary citation¶
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity Yupeng Wang, Haibao Tang, Jeremy D DeBarry, Xu Tan, Jingping Li, Xiyin Wang, Tae-ho Lee, Huizhe Jin, Barry Marler, Hui Guo, Jessica C Kissinger, Andrew H Paterson doi
External guides and resources¶
- If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za