Kleborate¶
Kleborate screens genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex. The bundle packages version 3.2.4.
Usage example¶
The following command can be executed in the terminal to load the bundle:
The module makes the kleborate command available. The kleborate_shell
command can be used to access a shell in the bundle.
Run pet list -t kleborate for a list of examples.
Performance notes¶
No performance notes available
Recommended resources per session¶
Kleborate should be run on a system with at least 64 GB of RAM and 8 threads. Minimap2 required resources were used as a guideline.
Benchmarks¶
No benchmarks available.
Community guides and tutorials¶
- No community guides available.
Official site and documentation¶
Licensing information¶
Kleborate is licensed under the GNU GPLv3 license.
Primary citation¶
Lam, MMC. et al. A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex, Nature Communications (2021). doi
External guides and resources¶
- If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za