Nextclade¶

Nextclade is used for viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement. The nextclade bundle packages version 2.14.0.

UFS HPC Usage Example¶

The following command can be executed in the terminal to load the bundle:

1	`module load nextclade`

The Nextclade utilities can be run as shown below:

1	`nextclade`

The nextclade_shell commmand can be used to access a shell in the nextclade bundle.

1	`nextclade_shell`

Performance Notes¶

No performance notes available

Recommended resources per session¶

No recommended resources available

Benchmarks¶

No benchmarks available.

UFS HPC Community Guides and Tutorials¶

No community guides available.

Official site and documentation¶

Licensing Information¶

Nextclade is licensed under the MIT license.

Primary citation¶

External Guides and Resources¶

If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za