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AquaCrop

The aquacrop bundle is a python implementation of the crop-water model AquaCrop. The bundle packages version 2.2.3.

Software Version
cython 3.0.0
jupyter 1.0.0
matplotlib 3.7.2
numpy 1.21.6
pandas 2.0.3
plotly 5.16.1
plotnine 0.10.1
pytables 3.8.0
scikit-learn 1.3.0
scipy 1.11.2
seaborn 0.12.2
spyder 5.4.4
sympy 1.12
aquacrop 2.2.3

UFS HPC Usage Example

The following command executed in the terminal will be enough to load the bundle:

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module load aquacrop
The Spyder ide, Jupyter-notebook, and Python and IPython can be run as shown as below: 
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spyder
jupyter-notebook
ipython
python
The aquacrop_shell commmand can be used to access a shell in the aquacrop bundle. 
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aquacrop_shell

Cloning the conda environment

If additional packages are required then the conda environment can be cloned to your home. Run the aquacrop_shell command and run the following commands in the aquacrop shell:

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conda create --name aquacrop++ --clone aquacrop
conda activate aquacrop++
conda install -q -c conda-forge pyarrow
The name aquacrop++ can be changed to your needs and pyarrow can be adjusted to your needs. The new environment can be accessed as follows: 

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ERN_OVERRIDE_CONDA_ENV="aquacrop++" ipython
Finally, creating the clone can be scripted using a HERE-DOC in Bash 
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aquacrop_shell <<SCRIPT
. /ern/bin/activate
conda create --name aquacrop++ --clone aquacrop
conda activate aquacrop++
conda install -q -c conda-forge pyarrow
SCRIPT
The environment can be removed as shown below: 
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aquacrop_shell <<SCRIPT
. /ern/bin/activate
conda-env remove -n aquacrop++
SCRIPT

Performance Notes

No performance notes available

No recommended resources available

Benchmarks

No benchmarks available.

UFS HPC Community Guides and Tutorials

  • No community guides available.

Official site and documentation

Licensing Information

AquaCrop is licensed under the APACHE 2 license

Primary citation

External Guides and Resources

  • If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za