QualiMap¶

QualiMap facilitates the quality control of alignment sequencing data and its derivatives like feature counts.

UFS HPC Usage Example¶

The following command can be executed in the terminal to load the bundle:

1	`module load qualimap`

The qualimap cli and gui can be run as shown as below:

1	`qualimap`

The qualimap_shell commmand can be used to access a shell in the qualimap bundle.

1	`qualimap_shell`

Performance Notes¶

No performance notes available

Recommended resources per session¶

No recommended resources available

Benchmarks¶

No benchmarks available.

UFS HPC Community Guides and Tutorials¶

No community guides available.

Official site and documentation¶

Licensing Information¶

QualiMap is licensed under the GPLv2 license.

Primary citation¶

Okonechnikov, K., Conesa, A., & García-Alcalde, F. (2015). ?Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.? Bioinformatics, btv566

External Guides and Resources¶

If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za