Funannotate¶
Funannotate is a genome prediction, annotation, and comparison software package. The bundle packages version 1.8.17.
Usage example¶
The following command can be executed in the terminal to load the bundle:
The module makes the funannotate command available. The funannotate_shell
command can be used to access a shell in the bundle.
Run pet list -t funannotate for a list of examples.
Performance notes¶
No performance notes available
Recommended resources¶
Funannotate should be run on a system with at least 128 GB of RAM and 32 threads.
Benchmarks¶
No benchmarks available.
Community guides and tutorials¶
- No community guides available.
Official site and documentation¶
Licensing information¶
Funannotate is licensed under the BSD 2-Clause license.
Primary citation¶
Jonathan M. Palmer, & Jason Stajich. (2020). Funannotate v1.8.1: Eukaryotic genome annotation (v1.8). Zenodo. doi
External guides and resources¶
- If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za