NanoPlot¶
NanoPlot can be used to plot long read sequencing data and alignments. The bundle packages version 1.44.1.
Usage example¶
The following command can be executed in the terminal to load the bundle:
The module makes the NanoPlot command available. The nanoplot_shell command
can be used to access a shell in the bundle.
Run pet list -t nanoplot for a list of examples.
Performance notes¶
No performance notes available
Recommended resources per session¶
NanoPlot should be run on a system with at least 4 GB of RAM and 2 threads.
Benchmarks¶
No benchmarks available.
Community guides and tutorials¶
- No community guides available.
Official site and documentation¶
Licensing information¶
NanoPlot is licensed under the MIT license.
Primary citation¶
NanoPack2: population-scale evaluation of long-read sequencing data Open Access Wouter De Coster, Rosa Rademakers Bioinformatics, Volume 39, Issue 5, May 2023, btad311, doi
External guides and resources¶
- If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za