Prodigal¶
Prodigal can be used to predict protein-coding genes for prokaryotic genomes. The bundle packages version 2.6.3.
Usage example¶
The following command can be executed in the terminal to load the bundle:
The module makes the prodigal command available. The prodigal_shell command
can be used to access a shell in the bundle.
Run pet list -t prodigal for a list of examples.
Performance notes¶
No performance notes available
Recommended resources¶
Prodigal should be run on a system with at least 8 GB of RAM and 2 threads.
Benchmarks¶
No benchmarks available.
Community guides and tutorials¶
- No community guides available.
Official site and documentation¶
Licensing information¶
Prodigal is licensed under the GPLv3 license.
Primary citation¶
Hyatt, D., Chen, GL., LoCascio, P.F. et al. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11, 119 (2010). doi
External guides and resources¶
- If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za