GffRead and GffCompare¶
Use GffRead to validate, filter, convert, and perform various other operations on GFF files. While, GffCompare can be used to compare, merge, annotate, and estimate accuracy of one or more GFF files. The bundle packages version 0.12.9 of GffCompare and version 0.12.7 of GffRead.
Usage example¶
The following command can be executed in the terminal to load the bundle:
The module makes the gffcompare and gffread commands available. The
gffutilities_shell command can be used to access a shell in the bundle.
Run pet list -t gffutilities for a list of examples.
Performance notes¶
No performance notes available
Recommended resources per session¶
GffCompare and GffRead should be run on a system with at least 32 GB of RAM and 8 threads.
Benchmarks¶
No benchmarks available.
Community guides and tutorials¶
- No community guides available.
Official site and documentation¶
- GffCompare
- GffRead
Licensing information¶
GffCompare is licensed under the MIT license, and GffRead also under the MIT license.
Primary citation¶
GFF Utilities: GffRead and GffCompare Geo Pertea, Mihaela Pertea DOI
External guides and resources¶
- If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za