S3A - Scalable and Accurate Annotated Assembly¶

S3A is a gene-targeted assembler based on the Overlap-Layout Consensus paradigm to reconstruct coding regions from domain annotated metagenomic sequence reads.

UFS HPC Usage Example¶

The following command executed in the terminal will be enough to load the bundle:

1	`module load s3a`

S3A can be run as shown below:

1	`S3A_Assembler.py`

The s3a_shell commmand can be used to access a shell in the s3a bundle.

1	`s3a_shell`

Performance Notes¶

No performance notes available

Recommended resources per session¶

No recommended resources available

Benchmarks¶

No benchmarks available.

UFS HPC Community Guides and Tutorials¶

No community guides available.

Official site and documentation¶

Licensing Information¶

S3A is freely available for download and use, however no licensing information is provided beyond this.

Primary citation¶

External Guides and Resources¶

If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za