MetaPhlAn¶
MetaPhlAn is a tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data with species level resolution. The metaphlan bundle packages version 4.0.6.
Usage example¶
The following command can be executed in the terminal to load the bundle:
The MetaPhlAn utilities can be run as shown as below:
The metaphlan_shell command can be used to access a shell in the metaphlan bundle.
Performance notes¶
No performance notes available
Recommended resources per session¶
No recommended resources available
Benchmarks¶
No benchmarks available.
Community guides and tutorials¶
- No community guides available.
Official site and documentation¶
Licensing information¶
MetaPhlAn is licensed under the MIT license.
Primary citation¶
External guides and resources¶
- If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za