Hybracter¶
Hybracter is an automated long-read first bacterial genome assembly tool. The module makes Hybracter release 0.11.2 available.
Usage example¶
The following command should be run in the terminal to load the Hybracter bundle:
The module makes the hybracter command available. The Hybracter environment
can be accessed using the hybracter_shell command.
Run pet list -t hybracter for a list of examples.
Performance notes¶
No performance notes available
Recommended resources¶
Hybracter should be run on a system with at least 32 GB of RAM and 16 threads doi.
Benchmarks¶
No benchmarks available.
Community guides and tutorials¶
- No community guides available.
Official site and documentation¶
Licensing information¶
Hybracter is licensed under the MIT license.
Primary citation¶
George Bouras, Ghais Houtak, Ryan R Wick, Vijini Mallawaarachchi, Michael J. Roach, Bhavya Papudeshi, Louise M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde - Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. (2024) Microbial Genomics doi.
External guides and resources¶
- If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za