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BCALM

BCALM constructs the compacted de Bruijn graph from sequencing data. The bcalm bundle packages version 2.2.3.

UFS HPC Usage Example

The following command can be executed in the terminal to load the bundle:

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module load bcalm
BCALM can be run as shown below: 
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bcalm
The bcalm_shell commmand can be used to access a shell in the bcalm bundle. 
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bcalm_shell

Performance Notes

No performance notes available

No recommended resources available

Benchmarks

No benchmarks available.

UFS HPC Community Guides and Tutorials

  • No community guides available.

Official site and documentation

Licensing Information

BCALM is licensed under the MIT license.

Primary citation

External Guides and Resources

  • If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za