Snippy¶
Snippy finds both substitutions (SNPs) and insertions/deletions (indels) between a haploid reference genome and your NGS sequence reads. The bundle packages version 4.6.0.
Usage example¶
The following command can be executed in the terminal to load the bundle:
Snippy can be run as shown below:
The snippy_shell command can be used to access a shell in the bundle.
Performance notes¶
No performance notes available
Recommended resources per session¶
No recommended resources available
Benchmarks¶
No benchmarks available.
Community guides and tutorials¶
- No community guides available.
Official site and documentation¶
Licensing information¶
Snippy is licensed under the GNU GPLv2 license.
Primary citation¶
External guides and resources¶
- If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za