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Samtools

The samtools bundle can be used to manipulate NGS data. Samtools version 1.17 is packaged.

UFS HPC Usage Example

The following command can be executed in the terminal to load the bundle:

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module load samtools
Samtools can be run as shown as below: 
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samtools
The samtools_shell commmand can be used to access a shell in the samtools bundle. 
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samtools_shell

Performance Notes

No performance notes available

No recommended resources available

Benchmarks

No benchmarks available.

UFS HPC Community Guides and Tutorials

  • No community guides available.

Official site and documentation

Licensing Information

Samtools is licensed under the MIT/Expat license.

Primary citation

External Guides and Resources

  • If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za