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Krona Tools

Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files. The krona bundle packages version 2.8.1.

UFS HPC Usage Example

The following command can be executed in the terminal to load the bundle:

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module load krona
The Krona Tools utilities can be run as shown below: 
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ktClassifyBLAST
ktImportBLAST
ktImportMETAREP-BLAST
ktImportTaxonomy
ktGetContigMagnitudes
ktImportDiskUsage
ktImportMETAREP-EC
ktImportText
ktGetLCA
ktImportEC
ktImportMGRAST
ktImportXML
ktGetLibPath
ktImportFCP
ktImportPhymmBL
ktUpdateTaxonomy.sh
ktGetTaxIDFromAcc
ktImportGalaxy
ktImportRDP
ktutil
ktGetTaxInfo
ktImportKrona
ktImportRDPComparison
The krona_shell commmand can be used to access a shell in the krona bundle. 
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krona_shell

Performance Notes

No performance notes available

No recommended resources available

Benchmarks

No benchmarks available.

UFS HPC Community Guides and Tutorials

  • No community guides available.

Official site and documentation

Licensing Information

Krona Tools is licensed under a custom license.

Primary citation

External Guides and Resources

  • If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za