Salmon¶
Salmon is used to produce a highly accurate, transcript-level quantification estimates from RNA-seq data. The bundle packages version 1.10.3.
Usage example¶
The following command can be executed in the terminal to load the bundle:
Salmon can be run as shown below:
The salmon_shell command can be used to access a shell in the bundle.
Performance notes¶
No performance notes available
Recommended resources per session¶
No recommended resources available
Benchmarks¶
No benchmarks available.
Community guides and tutorials¶
- No community guides available.
Official site and documentation¶
Licensing information¶
Salmon is licensed under the GPLv3 license.
Primary citation¶
Patro, R., Duggal, G., Love, M. I., Irizarry, R. A., & Kingsford, C. (2017). Salmon provides fast and bias-aware quantification of transcript expression. Nature Methods, source.
External guides and resources¶
- If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za