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Hybracter

Hybracter is an automated long-read first bacterial genome assembly tool. The module makes Hybracter release 0.11.2 available.

Usage example

The following command should be run in the terminal to load the Hybracter bundle:

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module load hybracter

The module makes the following command available:

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hybracter

The Hybracter environment can be accessed using the hybracter_shell command.

Run pet list -t hybracter for a list of examples. To run an example:

  1. Press Ctrl+x and Ctrl+r.
  2. Type #hybracter.
  3. Choose the example you wish to run.
  4. Fill in any fields in the dialog.
  5. Press Enter
  6. The command is available at the prompt, make any changes before pressing Enter to run the command.

Performance notes

No performance notes available

Hybracter should be run on a system with at least 32 GB of RAM and 16 threads doi.

Benchmarks

No benchmarks available.

Community guides and tutorials

  • No community guides available.

Official site and documentation

Licensing information

Hybracter is licensed under the MIT license.

Primary citation

George Bouras, Ghais Houtak, Ryan R Wick, Vijini Mallawaarachchi, Michael J. Roach, Bhavya Papudeshi, Louise M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde - Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. (2024) Microbial Genomics doi.

External guides and resources

  • If you know of a guide/tutorial that you have found useful, please help us share it by contacting the HPC staff at hpc@ufs.ac.za